Englander Institute for Precision Medicine

Publications

Found 21 results
Author Title Type [ Year(Asc)]
Filters: Author is Suhre, Karsten  [Clear All Filters]
2024
Suhre K.  2024.  Genetic associations with ratios between protein levels detect new pQTLs and reveal protein-protein interactions.. Cell Genom. 4(3):100506.
Arnold M, Buyukozkan M, P Doraiswamy M, Nho K, Wu T, Gudnason V, Launer LJ, Wang-Sattler R, Adamski J, De Jager PL et al..  2024.  Individual bioenergetic capacity as a potential source of resilience to Alzheimer's disease.. medRxiv.
Suhre K, Venkataraman GRam, Guturu H, Halama A, Stephan N, Thareja G, Sarwath H, Motamedchaboki K, Donovan MKR, Siddiqui A et al..  2024.  Nanoparticle enrichment mass-spectrometry proteomics identifies protein-altering variants for precise pQTL mapping.. Nat Commun. 15(1):989.
2023
Batra R, Uni R, Akchurin OM, Alvarez-Mulett S, Gómez-Escobar LG, Patino E, Hoffman KL, Simmons W, Whalen W, Chetnik K et al..  2023.  Urine-based multi-omic comparative analysis of COVID-19 and bacterial sepsis-induced ARDS.. Mol Med. 29(1):13.
2022
Buyukozkan M, Alvarez-Mulett S, Racanelli AC, Schmidt F, Batra R, Hoffman KL, Sarwath H, Engelke R, Gomez-Escobar L, Simmons W et al..  2022.  Integrative metabolomic and proteomic signatures define clinical outcomes in severe COVID-19.. iScience. 25(7):104612.
Chetnik K, Benedetti E, Gomari DP, Schweickart A, Batra R, Buyukozkan M, Wang Z, Arnold M, Zierer J, Suhre K et al..  2022.  maplet: an extensible R toolbox for modular and reproducible metabolomics pipelines.. Bioinformatics. 38(4):1168-1170.
Batra R, Whalen W, Alvarez-Mulett S, Gómez-Escobar LG, Hoffman KL, Simmons W, Harrington J, Chetnik K, Buyukozkan M, Benedetti E et al..  2022.  Multi-omic comparative analysis of COVID-19 and bacterial sepsis-induced ARDS.. medRxiv.
Batra R, Whalen W, Alvarez-Mulett S, Gómez-Escobar LG, Hoffman KL, Simmons W, Harrington J, Chetnik K, Buyukozkan M, Benedetti E et al..  2022.  Multi-omic comparative analysis of COVID-19 and bacterial sepsis-induced ARDS.. PLoS Pathog. 18(9):e1010819.
Buyukozkan M, Suhre K, Krumsiek J.  2022.  SGI: automatic clinical subgroup identification in omics datasets.. Bioinformatics. 38(2):573-576.
Batra R, Uni R, Akchurin OM, Alvarez-Mulett S, Gómez-Escobar LG, Patino E, Hoffman KL, Simmons W, Chetnik K, Buyukozkan M et al..  2022.  Urine-based multi-omic comparative analysis of COVID-19 and bacterial sepsis-induced ARDS.. medRxiv.
Gomari DP, Schweickart A, Cerchietti L, Paietta E, Fernandez H, Al-Amin H, Suhre K, Krumsiek J.  2022.  Variational autoencoders learn transferrable representations of metabolomics data.. Commun Biol. 5(1):645.
2021
Wolujewicz P, Aguiar-Pulido V, AbdelAleem A, Nair V, Thareja G, Suhre K, Shaw GM, Finnell RH, Elemento O, M Ross E.  2021.  Genome-wide investigation identifies a rare copy-number variant burden associated with human spina bifida.. Genet Med. 23(7):1211-1218.
Suhre K, Sarwath H, Engelke R, Sohail MUmar, Cho SJung, Whalen W, Alvarez-Mulett S, Krumsiek J, Choi AMK, Schmidt F.  2021.  Identification of Robust Protein Associations With COVID-19 Disease Based on Five Clinical Studies.. Front Immunol. 12:781100.
Aguiar-Pulido V, Wolujewicz P, Martinez-Fundichely A, Elhaik E, Thareja G, Aleem AAbdel, Chalhoub N, Cuykendall T, Al-Zamer J, Lei Y et al..  2021.  Systems biology analysis of human genomes points to key pathways conferring spina bifida risk.. Proc Natl Acad Sci U S A. 118(51)
2020
Benedetti E, Pučić-Baković M, Keser T, Gerstner N, Buyukozkan M, Štambuk T, Selman MHJ, Rudan I, Polašek O, Hayward C et al..  2020.  A strategy to incorporate prior knowledge into correlation network cutoff selection.. Nat Commun. 11(1):5153.
Verma A, Muthukumar T, Yang H, Lubetzky M, Cassidy MF, Lee JR, Dadhania DM, Snopkowski C, Shankaranarayanan D, Salvatore SP et al..  2020.  Urinary cell transcriptomics and acute rejection in human kidney allografts.. JCI Insight. 5(4)
2019
Quell JD, Römisch-Margl W, Haid M, Krumsiek J, Skurk T, Halama A, Stephan N, Adamski J, Hauner H, Mook-Kanamori D et al..  2019.  Characterization of Bulk Phosphatidylcholine Compositions in Human Plasma Using Side-Chain Resolving Lipidomics.. Metabolites. 9(6)
Halama A, Kahal H, Bhagwat AM, Zierer J, Sathyapalan T, Graumann J, Suhre K, Atkin SL.  2019.  Metabolic and proteomic signatures of hypoglycaemia in type 2 diabetes.. Diabetes Obes Metab. 21(4):909-919.
Do KTrinh, Rasp DJN-P, Kastenmüller G, Suhre K, Krumsiek J.  2019.  MoDentify: phenotype-driven module identification in metabolomics networks at different resolutions.. Bioinformatics. 35(3):532-534.
2018
Halama A, Kulinski M, Dib SS, Zaghlool SB, Siveen KS, Iskandarani A, Zierer J, Prabhu KS, Satheesh NJ, Bhagwat AM et al..  2018.  Accelerated lipid catabolism and autophagy are cancer survival mechanisms under inhibited glutaminolysis.. Cancer Lett. 430:133-147.
Do KTrinh, Wahl S, Raffler J, Molnos S, Laimighofer M, Adamski J, Suhre K, Strauch K, Peters A, Gieger C et al..  2018.  Characterization of missing values in untargeted MS-based metabolomics data and evaluation of missing data handling strategies.. Metabolomics. 14(10):128.